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publications

MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins

Published in Nucleic Acids Research, 2019

Ribeiro, D. M., Briere, G., Bely, B., Spinelli, L., & Brun, C. (2019). MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins. Nucleic Acids Research, 47(D1), D398–D402. https://doi.org/10.1093/nar/gky1039
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Maternal dietary omega-3 deficiency worsens the deleterious effects of prenatal inflammation on the gut-brain axis in the offspring across lifetime

Published in Neuropsychopharmacology, 2021

Leyrolle, Q., Decoeur, F., Briere, G., Amadieu, C., Quadros, A. R. A. D. A., Voytyuk, I., ... & Nadjar, A. (2021). Maternal dietary omega-3 deficiency worsens the deleterious effects of prenatal inflammation on the gut-brain axis in the offspring across lifetime. Neuropsychopharmacology, 46(3), 579–602. https://doi.org/10.1038/s41386-020-00793-7
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Consensus clustering applied to multi-omics disease subtyping

Published in BMC Bioinformatics, 2021

Brière, G., Darbo, É., Thébault, P., & Uricaru, R. (2021). Consensus clustering applied to multi-omics disease subtyping. BMC Bioinformatics, 22(1), 361. https://doi.org/10.1186/s12859-021-04279-1
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N-3 PUFA deficiency disrupts oligodendrocyte maturation and myelin integrity during brain development

Published in Glia, 2022

Leyrolle, Q., Decoeur, F., Dejean, C., Brière, G., Leon, S., Bakoyiannis, I., ... & Nadjar, A. (2022). N-3 PUFA deficiency disrupts oligodendrocyte maturation and myelin integrity during brain development. Glia, 70(1), 50–70. https://doi.org/10.1002/glia.24088
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Methodological developments for omic data integration : applications to oncology and neurosciences

PhD thesis, University of Bordeaux, 2022

Briere, G. (2022). Methodological developments for omic data integration : applications to oncology and neurosciences, Bordeaux).
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Condition-specific and recurrent perturbation communities in multiple differential co-expression networks

JOBIM, 2022

BRIÈRE G, NADJAR N, URICARU R and THÉBAULT P. Condition-specific and recurrent perturbation communities in multiple differential co-expression networks.

Random Walk with Restart on a Biomedical Multilayer Network to Uncover Novel Phenotypes Associated with Rare Diseases

RECOMB/ISCB Conference on Regulatory and Systems Genomics with DREAM Challenges (Los Angeles), 2023

Award: Most Innovative Solution Award (Xcelerate RARE DREAM Challenge). Recording: YouTube.

Random walk with restart on multilayer networks: from node prioritisation to supervised link prediction and beyond

Published in BMC Bioinformatics, 2024

Baptista, A., Brière, G., & Baudot, A. (2024). Random walk with restart on multilayer networks: from node prioritisation to supervised link prediction and beyond. BMC Bioinformatics, 25(1), 70. https://doi.org/10.1186/s12859-024-05683-z
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The molecular landscape of premature aging diseases defined by multilayer network exploration

Published in Advanced Biology, 2024

Beust, C., Valdeolivas, A., Baptista, A., Brière, G., Lévy, N., Ozisik, O., & Baudot, A. (2024). The molecular landscape of premature aging diseases defined by multilayer network exploration. Advanced Biology, 8(11), 2400134. https://doi.org/10.1002/adbi.202400134
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Phenotypes extraction from clinical descriptions using Large Language Models

ESHG 2025 (Proceedings), 2025

Berardelli, S., Gazzo, A., De Paoli, F., Briere, G., Loire, B., Limongelli, I., ... & Zucca, S. (2025). Phenotypes extraction from clinical descriptions using Large Language Models. In Proceedings of ESHG 2025. ESHG Conference Organiser.

Using Networks and Prior Knowledge to Uncover Novel Rare Disease Phenotypes

Published in medRxiv, 2025

Brière, G., Beust, C., Térézol, M., & Baudot, A. (2025). Using Networks and Prior Knowledge to Uncover novel Rare Disease Phenotypes. medRxiv. https://doi.org/10.1101/2025.04.02.25325098
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Benchmarking the Impact of Data Leakage on the Performance of Knowledge Graph Embedding Models for Biomedical Link Prediction

Published in Bioinformatics, 2026

Galadriel Brière, Thomas Stosskopf, Benjamin Loire, Anaïs Baudot, Benchmarking the impact of data leakage on the performance of knowledge graph embedding models for biomedical link prediction, Bioinformatics, Volume 42, Issue 8, August 2026, btag608, https://doi.org/10.1093/bioinformatics/btag608
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teaching

Teaching experience 1

Undergraduate course, University 1, Department, 2014

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Teaching experience 2

Workshop, University 1, Department, 2015