Galadriel Brière, Thomas Stosskopf, Benjamin Loire, Anaïs Baudot, Benchmarking the impact of data leakage on the performance of knowledge graph embedding models for biomedical link prediction, Bioinformatics, Volume 42, Issue 8, August 2026, btag608, https://doi.org/10.1093/bioinformatics/btag608
Brière, G., Beust, C., Térézol, M., & Baudot, A. (2025). Using Networks and Prior Knowledge to Uncover novel Rare Disease Phenotypes. medRxiv. https://doi.org/10.1101/2025.04.02.25325098
Berardelli, S., Gazzo, A., De Paoli, F., Briere, G., Loire, B., Limongelli, I., ... & Zucca, S. (2025). Phenotypes extraction from clinical descriptions using Large Language Models. In Proceedings of ESHG 2025. ESHG Conference Organiser.
Beust, C., Valdeolivas, A., Baptista, A., Brière, G., Lévy, N., Ozisik, O., & Baudot, A. (2024). The molecular landscape of premature aging diseases defined by multilayer network exploration. Advanced Biology, 8(11), 2400134. https://doi.org/10.1002/adbi.202400134
Baptista, A., Brière, G., & Baudot, A. (2024). Random walk with restart on multilayer networks: from node prioritisation to supervised link prediction and beyond. BMC Bioinformatics, 25(1), 70. https://doi.org/10.1186/s12859-024-05683-z
BRIÈRE G, NADJAR N, URICARU R and THÉBAULT P. Condition-specific and recurrent perturbation communities in multiple differential co-expression networks.
Briere, G. (2022). Methodological developments for omic data integration : applications to oncology and neurosciences, Bordeaux).
Leyrolle, Q., Decoeur, F., Dejean, C., Brière, G., Leon, S., Bakoyiannis, I., ... & Nadjar, A. (2022). N-3 PUFA deficiency disrupts oligodendrocyte maturation and myelin integrity during brain development. Glia, 70(1), 50–70. https://doi.org/10.1002/glia.24088
Brière, G., Darbo, É., Thébault, P., & Uricaru, R. (2021). Consensus clustering applied to multi-omics disease subtyping. BMC Bioinformatics, 22(1), 361. https://doi.org/10.1186/s12859-021-04279-1
Leyrolle, Q., Decoeur, F., Briere, G., Amadieu, C., Quadros, A. R. A. D. A., Voytyuk, I., ... & Nadjar, A. (2021). Maternal dietary omega-3 deficiency worsens the deleterious effects of prenatal inflammation on the gut-brain axis in the offspring across lifetime. Neuropsychopharmacology, 46(3), 579–602. https://doi.org/10.1038/s41386-020-00793-7
Ribeiro, D. M., Briere, G., Bely, B., Spinelli, L., & Brun, C. (2019). MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins. Nucleic Acids Research, 47(D1), D398–D402. https://doi.org/10.1093/nar/gky1039
Conference proceedings talk at Testing Institute of America 2014 Annual Conference, Los Angeles, CA, USA
Talk at London School of Testing, London, UK
Tutorial at UC-Berkeley Institute for Testing Science, Berkeley, CA, USA
Talk at UC San Francisco, Department of Testing, San Francisco, CA, USA